rs223361340 SNP Detail

Summary

• ID
  rs223361340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154975333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGATGC TGACGATGCG
  GTGAGCCTCC AGCTTGAACT CCATCCTGCC TTCGCTTCCA GACGATAGGG TGAACGCCTG
  CTTGCCTTCT GAAGCTGCGA GAGGAGCTGT AGGCGGGATC AGGTCTTCCT CTGTGGTTGT
  ACCCTCGGCG TCTGAAAGCT CGGTGGAGAA AAGACCTGGT GACGCGTAGT CCCCCTCCGC
  Y
  GCTTCCCTTC AGACAACAGA ACCGTTCTGA GCCGGACTCT AAACTGAGCG CTGCGGGGCC
  ACACTGCACC TTATATATGC TCCTCGAACG CCAATCACAA AGCGCCGCTA ACCGTTCTGG
  GCGGGCAGAT GTGCCTCGTG CTCCGCCCCC GACCAATCAG AGGCAGAGGA GGGGCCCCAG
  GGCCTGTTCA AACGTTAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352010284	MGP_WTSI_1_156946717	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223361340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352010284	MGP_WTSI_1_156946717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154975333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	within coordinates
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	154 bp upstream
Ier5	immediate early response 5	within coordinates
Rr28750	regulatory region 28750	within coordinates
Rr396412	regulatory region 396412	within coordinates
Tssr9525	transcription start site region 9525	1356 bp downstream
Tssr9526	transcription start site region 9526	1328 bp downstream
Tssr9527	transcription start site region 9527	1291 bp downstream
Tssr14335	transcription start site region 14335	1585 bp upstream
Tssr14336	transcription start site region 14336	841 bp upstream
Tssr14337	transcription start site region 14337	106 bp upstream
Tssr14338	transcription start site region 14338	43 bp upstream
Tssr14339	transcription start site region 14339	43 bp downstream