rs223366666 SNP Detail

Summary

• ID
  rs223366666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5828142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGAGCG GACCCTATGA
  ATTTGCCAAA TGGGCACATG TAAACTGGAT GTAAGCCAAA AACGCACGGT GGTGGCAGCG
  GCCCACACGG TGCTCCAGGC CGGACCCGAC GGGAGACCTG CCCCGAAGCA GACACGCCCA
  GCTCGGGCCC ATGTTACAGT TCGAAGCACC CTCAAGACCC CGGCCCGCTG TCCAGGTACC
  S
  CCAAGTCTGA CCCAGGACCC ACGTTAACCC CGCTCAGCAG CACACTCACC GCGCCACGCC
  GCATCCCGCC AATCTCTGCG CGCCCGTCCC GCCCATCGGC GCATCCAGCC AATCGCCTCC
  CGCCCCATCC CGCCCATCGC TGCACGCTTC ATCCAGCCAA TCCCCGTGCG CCCCGCCTCT
  GGACCGAGGA AACGCGGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323549256	CHEV_11_5778145	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223366666					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5828142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2545	CpG island 2545	within coordinates
Gm53664	predicted gene, 53664	within coordinates
Pold2	polymerase (DNA directed), delta 2, regulatory subunit	within coordinates
Rr402404	regulatory region 402404	15 bp upstream
Rr442177	regulatory region 442177	within coordinates
Rr442178	regulatory region 442178	140 bp proximal
Rr442179	regulatory region 442179	1656 bp proximal
Rr442180	regulatory region 442180	1967 bp proximal
Tssr100216	transcription start site region 100216	226 bp upstream
Tssr106653	transcription start site region 106653	1233 bp upstream
Tssr106654	transcription start site region 106654	65 bp downstream
Tssr106655	transcription start site region 106655	109 bp downstream