rs223380810 SNP Detail

Summary

• ID
  rs223380810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:130165313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAAATCT ACACAGAGAT ATTGGCAAGT
  GGGTACGGGT TGAGCATTTC AACTTCAGGT TTCTTCTTTG TCTGAGGGTT GAGCCTGCCC
  AGTCCACATC TACCCAGATG TCTGCTCTCT GTTGCCCCTA TGTTTCACAA CTATAGTTTA
  R
  GCAACTATGA TCAACAGTTT CATCTCATAT ATATATATTA AAAATGTTAT CATACTCTAA
  GAGACCTACT TTAAAATATA TAAGAACTGT ACACACACAG TAAGTAGTGG ATAAACTGTG
  TGATAAAACA ATTGAACAAA CTTTATACCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323545584	CHEV_10_129766500	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223380810					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:130165313 () rs orientation: forward

Symbol	Name	Function Class
Rr441430	regulatory region 441430	1101 bp proximal
Rr441431	regulatory region 441431	1226 bp proximal
Tespa1	thymocyte expressed, positive selection associated 1	within coordinates
Tssr96492	transcription start site region 96492	1528 bp upstream
Tssr96493	transcription start site region 96493	1538 bp upstream