rs223385571 SNP Detail

Summary

• ID
  rs223385571
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180867740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTATCA GAACAAGAAG
  TGGTAGTAGT GGTCTTGTGG ATAAGCTCCA CCTTAAAAAA AATCATATGC TGCTCCATGT
  ACTGGTAGCT GAAGAAATCT ATTGCAATTC ACGGGTTACT CAGATGACAG TGTTTGGCGG
  CCAAATAGGA GACAGGGAGG ACACTGGTCC TCAGTTACCT TAGCACTGTC ACCCCCCCCC
  A
  CCCCCCCACC CCCAGACAAA GCAAAGCCAC AGAGCCTGGC TGGCTGGAGC CGGCTCCCAT
  GCAGAGAAAG GAAAGGAGAA ATCCCTGATT CTCCCTCCCC TGTAACTTCT CGGGTTCCCT
  AATAGCCAAA TGGTAGGCAG AATTCAGAGA TTGGAGAGCC TGAGGAACAG CCTGCAAGAC
  CTACCTGCCC TGTTGCTGTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J
ss352600101	MGP_WTSI_1_182970306	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J
rs223385571					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352600101	MGP_WTSI_1_182970306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180867740 () rs orientation: forward

Symbol	Name	Function Class
Rr424677	regulatory region 424677	136 bp distal
Rr424678	regulatory region 424678	391 bp distal
Rr424679	regulatory region 424679	111 bp distal