rs223390904 SNP Detail

Summary

• ID
  rs223390904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:38526539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATGTA TTTGATTGTT
  TTATCTCAAT GTATGTGTAT ATATGTGCTT GGTGTCTTAA AGAAAATATC AATTCTGACA
  TTGGAGTTCG AGGGTTGTGA GCAGTCGAAA GGGTGATGGG ATCCAAAGAC TTTTAACTTC
  TAAGACTCTC CAGCTCCCAT TGTACAACAA TTTTCAAAGG ATCTCTGCAA GTAGTTGTTT
  R
  GAATTGTTTA GAATTTAGTT TTTGAACCAG ACATTGTGGC ACATGCCTAA ATCTAGAGTA
  GCTGAGGTAG GATGACAAGT TTCCGGGCAG TTAGAGCTAC ACAGTTTAAG GAATAAATCA
  TTTGGTCCTT TGTTAGTGTG AGCTGCAATT AGCTAAAGCT GGTTATGGAA TCACGGATAA
  ATAGGAGACA CTAGGCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368010419	MGP_WTSI_6_38499604	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223390904					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368010419	MGP_WTSI_6_38499604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38526539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17313	CpG island 17313	1059 bp proximal
Gm56952	predicted gene, 56952	1159 bp upstream
Gm67915	predicted gene, 67915	881 bp downstream
Luc7l2	LUC7-like 2 (S. cerevisiae)	mRNA-UTR
Rr628836	regulatory region 628836	669 bp proximal
Rr628837	regulatory region 628837	1170 bp proximal
Rr628838	regulatory region 628838	1297 bp proximal
Rr628839	regulatory region 628839	1639 bp proximal
Tssr55654	transcription start site region 55654	1169 bp upstream
Tssr55655	transcription start site region 55655	1828 bp upstream
Tssr55656	transcription start site region 55656	1899 bp upstream
Tssr55657	transcription start site region 55657	1933 bp upstream
Tssr55658	transcription start site region 55658	1952 bp upstream
Tssr60415	transcription start site region 60415	1608 bp downstream