rs223390944 SNP Detail

Summary

• ID
  rs223390944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43519069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGGAA GCCCTGCCCC
  CGCCCCGCTC CTGCTGCAGG AGAGAGACAG TAGCCTGAGA CGCTGCACTG GGGAGGGACG
  TGAGGTGAGT GAGAAAAGGT GCCATTGCCT AGAAAGGCCC AGAGAGGCTA CTACCTCCTC
  CTCTGAGGCT ATCAGCGACT TGAGGGCTTG GTCCATGGTT CGAAGCTCCT CCTCCAGCTG
  Y
  CTGGCTCGGC TGGGGGCGGC GGGCATAGGT CAGGGGACAG AGCCTTGTTC CTGTGGCCTC
  TGGCCCGGGA AACTACCTGA CCCCTGTGCA CAGTGTCCCC CAGCTGAGCC CTCAGGCCGA
  GTTCTACCGT TTCCATTGAC ACCCAGGGTA TCCTTACCTC TCAGCCACCT CGGCTCTCTC
  TTCCGAGCGC TCCAGCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361322325	MGP_WTSI_4_43531941	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223390944					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361322325	MGP_WTSI_4_43531941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43519069 () rs orientation: forward

Symbol	Name	Function Class
Rr398232	regulatory region 398232	934 bp upstream
Tpm2	tropomyosin 2, beta	within coordinates
Tssr36976	transcription start site region 36976	628 bp downstream
Tssr36977	transcription start site region 36977	167 bp upstream
Tssr36978	transcription start site region 36978	339 bp upstream
Tssr41432	transcription start site region 41432	614 bp upstream
Tssr41433	transcription start site region 41433	596 bp upstream
Tssr41434	transcription start site region 41434	365 bp upstream
Tssr41435	transcription start site region 41435	186 bp downstream
Tssr41436	transcription start site region 41436	592 bp downstream
Tssr41437	transcription start site region 41437	976 bp downstream