rs223391237 SNP Detail

Summary

• ID
  rs223391237
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAACAA ATACAAAGTA
  AAAAATAAAT AAATAAAACA TGAGCTAGGT GGTGGTAGCG CACACCTTTA ATCCCAGCAC
  TTGGGAGGCA GAGGCGGGCG GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAAAGTGAGT
  TCCAGGACAG TCAGGGCTAC ACAGAGAAAC CCTGCCTCGA CAAAACTAAT AATAATAATA
  A
  TAATAATAAC GAAACATAGC CTTCCCTTTT AAGTAACACG CAATCCAGTC ATGCAGCATT
  ATTAAAAAAA AAAATCACAG ATATGTAAAA GTTTGATCCT CAGAGAGGGG AGTCAGGGAG
  TAGTATTTAA ATAGTGTATG TCTGGTTATT CTCCAGGTGT AGTATGGTCA AAGGCTGCTA
  CAAACATTTA GATAACAAAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss388640345	MGP_WTSI_13_53473353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs223391237					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388640345	MGP_WTSI_13_53473353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	405 bp distal
Rr403780	regulatory region 403780	381 bp downstream
Rr480032	regulatory region 480032	97 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	619 bp upstream
Tssr122583	transcription start site region 122583	611 bp upstream