rs223391361 SNP Detail

Summary

• ID
  rs223391361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTGGG GATCCTGTCT
  GCCTCCTAAA TGCTGGGATT CTAGGCTGCT ACACCTGCCC AGCCATAGCT GAGTCCTGGG
  GGCCTGAACC CTGGTCTTTA GCAGCATCTC GCTTGGTTCC CCTTCTCCCC TCCCGTACTT
  ATTTATTTAT TCAGAGACTG GGTCTTTCAC TGGAACTCAC GGATCAGATC AGGCTGGTCC
  Y
  TGGGATCCAC CTGTTTCTGC CTTCCCAGGG CTGGAACTAC AGGTGTCATG GCACTGGAGG
  AACTCAAGTC CCTCATGCTT GCCTGGCAAG CACTTTACTT AATAAGCCGT CTTCCCAGCT
  CCACCTAAGG CTACCTGAGT TTGCAATAAC CAGCTCTAAA AGTTCTACCA GCAGCTGGAG
  TGGTTGGAAG AGGATGCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322450384	CHEV_7_133414945	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223391361					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	286 bp proximal
Rr368426	regulatory region 368426	317 bp upstream
Rr381444	regulatory region 381444	381 bp downstream
Rr655453	regulatory region 655453	698 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	982 bp upstream
Tssr69003	transcription start site region 69003	997 bp upstream
Tssr69004	transcription start site region 69004	1013 bp upstream
Tssr69005	transcription start site region 69005	1032 bp upstream
Tssr69006	transcription start site region 69006	1044 bp upstream
Tssr69007	transcription start site region 69007	1075 bp upstream
Tssr69008	transcription start site region 69008	1095 bp upstream
Tssr69009	transcription start site region 69009	1158 bp upstream
Tssr69010	transcription start site region 69010	1353 bp upstream
Tssr69011	transcription start site region 69011	1416 bp upstream