rs223391598 SNP Detail

Summary

• ID
  rs223391598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTGACA AGTAAAAACT
  GAGGGTGGAA AGATGGCTCA GGGGTCAGAG TATTTCCTGT TCTTCCAGTG GACCCAGGGT
  TCCATTCCCA GCATCCCTTT GTGAAGTGGC TCCCAGTCAT TTCTAACTCG GGTCTAGGGG
  ATCTCTTCTG ACCTCTGACA CTATATATAC ACACATGGCA CATACACAGA GAGAAAGAGA
  K
  AGTCAGAGAG AGACAGACAG ACAGACACAC AGAAAGACAA AGACAGACAC ACAGAGAGAG
  GCAGAGCGAC GGAAGAGAAA GAGACACACA GAGAGAAAAA TAGAAATAAA ATAAACCTTT
  TAAAACAATA AATCTACTGA GATTCCCTCC TACAGTGGTG AGGTCAGGGG CTCCCCAGCC
  CTCCCGTACC TTCTGTTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321711310	CHEV_5_145400475	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223391598					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576416 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	867 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	822 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	929 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	703 bp distal
Rr624457	regulatory region 624457	758 bp distal