rs223392047 SNP Detail

Summary

• ID
  rs223392047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165483880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    acttgcaaa ctttatatgc cccagtacag
  gggaacgcca gggccaaaaa gtgggagtgg atgggtaggg gagtgggggg gagggtatgg
  gggacttttg ggatagcatt ggaaatgtaa atgaggaaaa tacctaataa aaaaatataa
  W
  aaaaaTTTAA AAGGCCAGGT GGAGGGCTAT GTATTCTGGG AAAAAAAACA AAACACTACA
  GGCTCCTTTA ATTTCCTAGG AGGGTGTAAA GTTCTTTGCT GTTCATTACA AATCAGAATC
  TAGAGcagtg gttctcaacc tctgagtcac                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087017	CHEV_1_167586442	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223392047					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165483880 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	21 bp upstream
Rr422412	regulatory region 422412	902 bp distal
Tssr9811	transcription start site region 9811	1025 bp downstream
Tssr9812	transcription start site region 9812	772 bp downstream
Tssr14775	transcription start site region 14775	1568 bp downstream