rs223394953 SNP Detail

Summary

• ID
  rs223394953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87321079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGACAAAGA ATGTGGTTAA AAGGGAGATT
  AAATAATATG ATTTCTTAAA GTCTACCTGC CAGTTTGTAA GTTTATATCT AGTTTCTCAA
  CTGTTTTCTA TAGGATGGTT TCTGTATGAT TTTATATCTG CTTACCTGGC CTTAAGTTTT
  Y
  TTATTGCTGC TGCTGGATGT TTATAGGATT TCCCCCCCTT CCTCTTCAAA TGTAAGTGTC
  TAATGGGTAG ACATATTTTC AAATAATTTT TACATCATCA CAAGCACACA AATGCGTAAC
  TACCTCTTTT CCTCCTCCCT TTCTTCCACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829362	CHEV_1_89289932	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223394953					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87321079 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Kcnj13	potassium inwardly-rectifying channel, subfamily J, member 13	within coordinates
Rr414787	regulatory region 414787	1254 bp proximal
Rr414788	regulatory region 414788	1362 bp proximal
Tssr12853	transcription start site region 12853	1364 bp downstream