rs223395900 SNP Detail

Summary

• ID
  rs223395900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7555815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGCAGAGG AAATCGATGC CAACGATGAT
  CTAAATTATT GGTCCGACTG GTCCGACAGT GACCAGATCA AGGTGAGTCC CAAACGGGCG
  TGGGAGCTGT TGCCTTCTCC TTGTGGTAGC ACCCTGATTA GCCCAGCTTG AGCTGGAGAG
  R
  CGCACTGGAA TATAAAGGTC ATCACGTCCC GGACAAGGCA CAGGGCTTAT TGCCCAGAAC
  CAAACTAAGT TTCCTCCCTG AGGGAGGGCA ACGTCGTAGG TTCAGTCAGT GTCTCCCCAG
  TATCTCGCCC CTCCCACCTC CTCTCTCTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321734095	CHEV_6_7505815	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223395900					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7555815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	96 bp distal
Rr146475	regulatory region 146475	within coordinates
Tac1	tachykinin 1	within coordinates
Tssr54885	transcription start site region 54885	748 bp downstream