rs223396315 SNP Detail

Summary

• ID
  rs223396315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120879991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGACCCT GAGCAGGATA
  TGCATCTGCG GGTTCAAAAC AGTCTTTCAG CCTTTGTCTT GTCCCTCATA TCCTGCCCCA
  TGCTCTGGAT GGAGGTGGGG AACCAGGTGG GGCAGTAGAG ATGTGACTAA GTAAACTGCA
  ACCCCAGACA CAGCTTGCAC TCTCCTGGAG AAAGGTTCCC ATCTCTGAAT GACACATGAC
  Y
  ACCATAGCAC AACTGGTTGT TATAATCAAT CTTCAGAAAG CACAAAACCT TTTGGCAAGA
  TCTCAGGGAA CAAAAAGTTT CAAAATACCT ATTTTCTGAT GCCCATGAAA GGGTGGCTAA
  TGGATTGGTT TTCAGTCTAG CTCCTATATC CTGAGGTTAA ACTTCTGCCA AAATCTATTG
  TTCTATAAAT ACGCCAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384952567	MGP_WTSI_11_120850479	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223396315					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952567	MGP_WTSI_11_120850479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120879991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	976 bp proximal
Csnk1d	casein kinase 1, delta	within coordinates
Rr461861	regulatory region 461861	1350 bp distal
Rr461862	regulatory region 461862	273 bp distal
Rr461863	regulatory region 461863	within coordinates
Rr461864	regulatory region 461864	325 bp proximal
Rr461865	regulatory region 461865	1742 bp proximal
Rr461866	regulatory region 461866	1894 bp proximal
Rr461867	regulatory region 461867	1917 bp proximal
Tssr106388	transcription start site region 106388	1393 bp upstream
Tssr112430	transcription start site region 112430	1855 bp downstream
Tssr112431	transcription start site region 112431	1874 bp downstream
Tssr112432	transcription start site region 112432	1913 bp downstream
Tssr112433	transcription start site region 112433	1938 bp downstream