rs223398327 SNP Detail

Summary

• ID
  rs223398327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117429478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCATGT CCAGTAAGTC
  ACAAAGGCCT GTAAGTCTAG ATCCAGAGGG TCTGAAGCCC TCTTTTGTAC TCTGCATGTA
  TCTGCGCATG CATGGGGCAC ACACACACAC ACACACACAC ACACACACAC GGTAGCACAG
  AAACAAAAAT AAATCTAATA AAAAAATGAA AGAAAAAATT TTTTTCAAAA TCAAATATCT
  K
  CTTGCCAAAG CTCCTGGTTC CACACTAGCA TGCTGAAAAT GAGCTACTAA TCAAGATCAC
  TGCTCAGCTG CCTTTAGAGG CAGAGCCCCT AGAACTCGTA AGTATCGTGA TACCTTTCTC
  ATTGAATTAT CATTTTTCTG TTGATGATTT ATTTTGCTTT CAAGGCATAA TAATATTGTG
  TTGTTAACAA CAGACAAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323497990	CHEV_10_117030629	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223398327					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117429478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	484 bp proximal
Gm63651	predicted gene, 63651	1153 bp upstream
Kifc5c-ps	kinesin family member C5C, pseudogene	780 bp upstream