rs223401423 SNP Detail

Summary

• ID
  rs223401423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70413160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGATGGC TCAGCGGTTA AAGAGCACTG ACTGCTCTTC
  CGAAGGTCCT GAGTTCAAAT CCCAGCAACC ACATGATGGC TCATCGCCAT CCATAATGAG
  W
  TCTGATGCCC TCCTTTGGTG TGTCTGAAGA CAGCTACAGT GTACTTACAT ATAATAATAA
  ATAAAATAAT GAATAAAATC TTTTTTTAAA AAATCAGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735945	CHEV_11_70335836	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223401423					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70413160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	1639 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	1598 bp downstream
Rr450320	regulatory region 450320	1035 bp proximal
Rr450321	regulatory region 450321	1235 bp proximal