rs223402135 SNP Detail

Summary

• ID
  rs223402135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTTCTTGG GCTTGTATGT TGAGAAGCTA
  TGGCCTAGCC TCTCTAGGTT CTATGAGCAT GGGTGCGTTT GAGTAACAGC ACTGGGATCC
  CTTTCCTGGT TGAACAGAGC TCAGCTGAAT CCAAAGAGAT TCTTTCAAAC CTACTGAGTC
  Y
  TAGAAACACA TCTCTGCATT GGTAAGGAAC CTTGCCTCTG CCTTATTTCT TCTGCCAAAA
  GGTGGGTTAA ACATCTTCTG CAAAAGGTAG ATTGATTGCC ATACTTtgac caaaccatct
  cagtcagtca acaggttctc cagagcagga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635027	CHEV_1_10868109	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223402135					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948252 () rs orientation: forward

Symbol	Name	Function Class
Rr11561	regulatory region 11561	1949 bp proximal
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	584 bp upstream