rs223404957 SNP Detail

Summary

• ID
  rs223404957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3994497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCACAGT GTTGGGATTA
  CAGGCACGAG TCACCACATT CAACTCCTAC CATTTCTTTA GAGTTATATT AAAGATGATT
  TTAATCCATA GAACATCATG CCTGGAATGG ACCAAAGACC ATGGAACCCT GTTTTTTACG
  ATAGGGAGAT AGGACAAGGT AGAGCAAGAA CCCAGGTTAT CTTGCCCTCC CCCTCCCCAA
  R
  TCCCTCCCCC TGCCTTCTCC CTTCTCTCTC CCACACTCTG ATTTTACTTG GGCCTCAGGG
  TACTGAAAGC TAATTCCAGG GAGAGGCCGT GCCCTGGCTT TGGGCCTCTG GCCTGGACCC
  TTCTGTTCTG TGGGGCATGC AGTCCTTGCA GGCTGGGGTG GGCTACTGTG CTAATACATG
  CATTAGTGGA TGAAAGCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323872988	CHEV_12_3944497	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223404957					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3994497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4368	CpG island 4368	1714 bp distal
Rr279	regulatory region 279	1883 bp distal
Rr280	regulatory region 280	178 bp proximal
Rr267315	regulatory region 267315	1897 bp distal
Rr370609	regulatory region 370609	within coordinates