rs223407892 SNP Detail

Summary

• ID
  rs223407892
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29691400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGTGAC AGATTTTTCT
  CCCCTAAAAG TGTAGCTAGT CCTAAGCCCA AGACTTTACC CAGTTTGAAA GAACTTGGGA
  AGCAAGTCTC CAATTACTGG AAAAGAAAAA AATACAGCCT GAGAAGGTCG TATCAGTGCC
  AGAACCATCT GCCCACCTGT GTGACTTAGG TGAGACTCCT TGGCGCATTT CTACAAGACT
  S
  TCTTGGGGCC CTGGAAATAG GTGTGGTTGT ATCAGATTCA TCTCTGTATC TCTAGAGAGT
  AGGGCGATTA GCAGAAGTCT TAGGGCTGAG AGCACTTTGA ATTTCTCGGC TTTTTTCAGG
  ATTTCACCTC CTGATTACAA AGCTTTGGGA TAGGTGGTGT GATGGGCACT ACAGGAAGCA
  TCATCATTCC ATCTTCAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390672145	MGP_WTSI_14_30782629	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223407892					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390672145	MGP_WTSI_14_30782629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29691400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6266	CpG island 6266	544 bp distal
Gm47414	predicted gene, 47414	1348 bp upstream
Rr369802	regulatory region 369802	1265 bp downstream
Rr369803	regulatory region 369803	915 bp downstream
Rr489727	regulatory region 489727	1125 bp distal
Rr489728	regulatory region 489728	246 bp distal
Rr489729	regulatory region 489729	1994 bp proximal
Selenok	selenoprotein K	within coordinates
Tssr124803	transcription start site region 124803	1109 bp downstream
Tssr124804	transcription start site region 124804	1082 bp downstream
Tssr124805	transcription start site region 124805	981 bp downstream
Tssr127829	transcription start site region 127829	1203 bp upstream