rs223409537 SNP Detail

Summary

• ID
  rs223409537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138017458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAACCAGT ACCCCCGGAG CTCTTGACTC TAGCTGCATA
  TGTATCAAAA GATGGCCTAG TCGGCCATCA CTGGAAAGAG AGGCCCATTG GTCAGGCAAA
  Y
  TTTATATGCC CCAGTACAGG GGAACGCCAG GGCCAAAAAA ATAGGAATGG GTGGGTAGGG
  GAGTTGGGGG GGAGGGTGTG GGGGGCTTTT GGGATAGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss359906954	MGP_WTSI_3_137974661	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	C	C	T	T	T	T	C	C	C	C	T	C	T	T	C	C	C	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs223409537					SNP	C	C	T	T	C	C	T	T	T	T	C	C	C	C	T	C	T	T	C	C	C	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359906954	MGP_WTSI_3_137974661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138017458 () rs orientation: forward

Symbol	Name	Function Class
Adh6a	alcohol dehydrogenase 6A (class V)	1589 bp upstream
Rr586123	regulatory region 586123	465 bp distal
Rr586124	regulatory region 586124	1295 bp proximal
Tssr31974	transcription start site region 31974	1582 bp upstream