rs223414677 SNP Detail

Summary

• ID
  rs223414677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91054275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTCATT TAAATTATTT
  TTCCTAAACT TTTTATTTAT TTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  TTATAAACAG GTCTTGCTTT CCCTCCTACT GAGGTTGATT CGGAACTGCA GTAATGTGGC
  AGGGTCCTTC TTCAGAAGTC AATCTGTGCA ATGAAATTAA AGCTTAGAAA ACATGAGAGA
  Y
  GGAGCACTTT GTCAGTGTAA GGGACCACCA TGAGGAGTTT CTCCTAACTT CCAGGGAGAG
  TTGGTTTAAT TTCCCGAAAT GCAGTGCTTT TCTAATGTCA CCAAGTTTGA ATGCTCTCTG
  AGCATGTCAG TTTTAATGTA AGCTTCCCAG ACAGGCAGGT ACACACGGAA ACTCCAGAGC
  AGAGGTAAAG ATTGACATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847556	MGP_WTSI_5_91335442	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223414677					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847556	MGP_WTSI_5_91335442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91054275 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	478 bp downstream
Tssr47234	transcription start site region 47234	1971 bp downstream
Tssr47235	transcription start site region 47235	1213 bp downstream
Tssr47236	transcription start site region 47236	1174 bp downstream
Tssr47237	transcription start site region 47237	1154 bp downstream
Tssr47238	transcription start site region 47238	1095 bp downstream
Tssr47239	transcription start site region 47239	1090 bp downstream
Tssr47240	transcription start site region 47240	1071 bp downstream
Tssr47241	transcription start site region 47241	1042 bp downstream
Tssr47242	transcription start site region 47242	1017 bp downstream
Tssr47243	transcription start site region 47243	999 bp downstream
Tssr47244	transcription start site region 47244	960 bp downstream
Tssr47245	transcription start site region 47245	943 bp downstream
Tssr47246	transcription start site region 47246	889 bp downstream
Tssr47247	transcription start site region 47247	835 bp downstream
Tssr47248	transcription start site region 47248	776 bp downstream
Tssr47249	transcription start site region 47249	715 bp downstream
Tssr47250	transcription start site region 47250	577 bp downstream
Tssr47251	transcription start site region 47251	512 bp downstream
Tssr47252	transcription start site region 47252	460 bp downstream
Tssr51814	transcription start site region 51814	1198 bp upstream
Tssr51815	transcription start site region 51815	1152 bp upstream
Tssr51816	transcription start site region 51816	1119 bp upstream