rs223424684 SNP Detail

Summary

• ID
  rs223424684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCAAGG TACAAACTCC
  AGCCGCGTCG ATCAGGCACC CAGCCTCTCC CAGCCCCTCT GCTTTCTTTG TTCCACTAAG
  GGAACTGGCT ACTGCTCTGG AGGACAAGAC CACCGAGGTG GGTGCGAGCC CGGGGGCTTA
  GGAAACTGAA GGTATGGGGT CGGGGAGGTG CAAACTAGAA TTGAGCTTGT CGCTTTAGAA
  R
  GAGTGTTGTT GACGGCCACC TGTGTGACTC AGGGGCGCCA AGAGCATTAG GTGCTCCAGG
  GCTGCTGTAG CTCTGCAAGT TTCACCTCTG GGATCTGACT CAGCCCTTAC AGAAGGGATC
  GGTCACCCTG TCCAGGGTGA TACAGCCGGC AAGGTTTGAG CCCAGCTATT TCCTTGTTCC
  TAGTCTTGCT TTATCTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367526413	MGP_WTSI_6_17414332	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223424684					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367526413	MGP_WTSI_6_17414332	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	within coordinates
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	284 bp distal
Rr626800	regulatory region 626800	837 bp distal
Rr626801	regulatory region 626801	794 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	890 bp downstream
Tssr55051	transcription start site region 55051	751 bp downstream
Tssr55052	transcription start site region 55052	523 bp downstream
Tssr55053	transcription start site region 55053	503 bp downstream
Tssr55054	transcription start site region 55054	434 bp downstream
Tssr55055	transcription start site region 55055	426 bp downstream
Tssr55056	transcription start site region 55056	261 bp downstream
Tssr55057	transcription start site region 55057	219 bp downstream
Tssr55058	transcription start site region 55058	183 bp downstream
Tssr55059	transcription start site region 55059	158 bp downstream