rs223426818 SNP Detail

Summary

• ID
  rs223426818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30429261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGCCAAGC GCCACCTCTT CTCGCTCATC
  CGAGAACTTT GAACCCCGCC CTGAACGCAA GGTGATCGGC GCAGAGACAA GAGGGCAAAG
  CTGTGCGCAT TCTCGTTTTT ATTTCATTGT TGACCCGGTG GCGGCGCCTT TGAGTGGAAG
  Y
  CGAAGTCAGG AACGCGAGGT GCGCAGGGGA GCAAGGAGGG GCCTTTTGTG TTACTTCTCT
  CGGCTAAACA TGTAGCGGAG GAGGTCGACC ACTCGGTTAC TGTAGCCATA TTCGTTGTCG
  TACCTGAGGA GGCGAGGAAG GAGGCGTCAg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322136281	CHEV_7_31514855	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223426818					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30429261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18821	CpG island 18821	within coordinates
Gapdhs	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	within coordinates
Rr400253	regulatory region 400253	within coordinates
Rr644901	regulatory region 644901	920 bp distal
Rr644902	regulatory region 644902	847 bp distal
Rr644903	regulatory region 644903	197 bp distal
Tmem147	transmembrane protein 147	302 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65802	transcription start site region 65802	193 bp downstream
Tssr65803	transcription start site region 65803	77 bp downstream
Tssr65804	transcription start site region 65804	30 bp downstream
Tssr65805	transcription start site region 65805	1338 bp upstream
Tssr71842	transcription start site region 71842	999 bp upstream
Tssr71843	transcription start site region 71843	383 bp upstream
Tssr71844	transcription start site region 71844	335 bp upstream
Tssr71845	transcription start site region 71845	280 bp upstream