rs223439261 SNP Detail

Summary

• ID
  rs223439261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101940501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACACCG TATCAGAGCC
  ACACACTCTG TCTTGTCATT TATTTTTATT TTATTTTATT TTTTTAATTT TATTTTTTGG
  TTTTTCGAGA CAGGATTTCT CTGTATAGCC CTGGCTGTCC TGGAACTCAC TTTGTAGACC
  AGGCTGGCCT CGAACTCAGA AATCCGCCTG CCTCTGCCTC CCGAGTGCTG GGATTAAAGG
  Y
  GTGTGCCACC ATGCCCGGCT TGGTCATTTA TTTTTTTAAT ATTAAAGTGA TCCAATTTTT
  TTTTTTTTTT TGGGCAAGCT TTTAACAAGA ACTGAATCTT TTGTTTGTTT GTTTTGTATT
  TGTTTTTTGA GACAGTCTTA CTGTGAAGCT CTGGCTTACT ATCCCTCTGC CTCATCCTCA
  AAAGTAGTTG GAGTTACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387128017	MGP_WTSI_12_103212452	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223439261					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387128017	MGP_WTSI_12_103212452	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101940501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	1097 bp proximal
Cpsf2	cleavage and polyadenylation specific factor 2	1746 bp upstream
Gm59441	predicted gene, 59441	486 bp downstream
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	within coordinates
Rr387709	regulatory region 387709	891 bp upstream
Rr471464	regulatory region 471464	793 bp proximal
Rr471465	regulatory region 471465	1675 bp proximal
Rr471466	regulatory region 471466	1757 bp proximal
Tssr3923	transcription start site region 3923	1641 bp downstream
Tssr114729	transcription start site region 114729	1124 bp upstream
Tssr114730	transcription start site region 114730	1483 bp upstream
Tssr114731	transcription start site region 114731	1723 bp upstream
Tssr114732	transcription start site region 114732	1764 bp upstream
Tssr117383	transcription start site region 117383	1441 bp downstream
Tssr117384	transcription start site region 117384	1523 bp downstream
Tssr117385	transcription start site region 117385	1671 bp downstream
Tssr117386	transcription start site region 117386	1693 bp downstream
Tssr117387	transcription start site region 117387	1737 bp downstream
Tssr117388	transcription start site region 117388	1781 bp downstream
Tssr117389	transcription start site region 117389	1962 bp downstream