rs223443093 SNP Detail

Summary

• ID
  rs223443093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141932761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTCTA AGAGGAAGCC
  AGGGTCACGG TCCTGAGAAG CTGAGCTGGC TTCAGCCATG GACATAGCAC TTGCTATCAC
  TCTGCTTCTC CTGTAAACAT TTCTCTCAAC TCCCCTACAC AATACCTTCA AACAGAACAC
  AGGGAGAGTG GTCTGTACCT ACAGCAGTAA ATGTTCTTCA GCAACCAGCG AGTAAGTATG
  Y
  AAGCTTGCCA CCTCCGACCT GAGGGGCCTG GGTAATGTGT CACATCTGGC CAGGCATCAC
  TCTGGGGCAC GATTACCCAA AGCTGAAGGG AAGCTTTCAT CTCAGGAGCT GCCGTCCTGG
  CAGGCCTCTG TAACCATCTT CCTCCTGGCC CATGGATCCC TCAGCCTCAC CCTGTTCTCT
  TGCCTAAGTC TCCACCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449943	MGP_WTSI_7_149564929	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223443093					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449943	MGP_WTSI_7_149564929	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141932761 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Tssr70134	transcription start site region 70134	1948 bp downstream
Tssr70135	transcription start site region 70135	1893 bp downstream
Tssr70136	transcription start site region 70136	1681 bp downstream
Tssr70137	transcription start site region 70137	1759 bp upstream
Tssr70138	transcription start site region 70138	1807 bp upstream
Tssr70139	transcription start site region 70139	1826 bp upstream
Tssr70140	transcription start site region 70140	1856 bp upstream
Tssr70141	transcription start site region 70141	1869 bp upstream
Tssr70142	transcription start site region 70142	1905 bp upstream
Tssr75765	transcription start site region 75765	1964 bp upstream
Tssr75766	transcription start site region 75766	1942 bp upstream
Tssr75767	transcription start site region 75767	1932 bp upstream
Tssr75768	transcription start site region 75768	1910 bp upstream
Tssr75769	transcription start site region 75769	1888 bp upstream
Tssr75770	transcription start site region 75770	1856 bp upstream
Tssr75771	transcription start site region 75771	1630 bp upstream
Tssr75772	transcription start site region 75772	1572 bp upstream
Tssr75773	transcription start site region 75773	1372 bp upstream
Tssr75774	transcription start site region 75774	1766 bp downstream
Tssr75775	transcription start site region 75775	1787 bp downstream
Tssr75776	transcription start site region 75776	1793 bp downstream
Tssr75777	transcription start site region 75777	1826 bp downstream
Tssr75778	transcription start site region 75778	1866 bp downstream
Tssr75779	transcription start site region 75779	1902 bp downstream
Tssr75780	transcription start site region 75780	1912 bp downstream
Tssr75781	transcription start site region 75781	1934 bp downstream
Tssr75782	transcription start site region 75782	1958 bp downstream