rs223453155 SNP Detail

Summary

• ID
  rs223453155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130536972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtgtCTCT CTTACCCCTC TCTTACCCCT
  TGATGTGTGG GACTTGGACG AAGTTGAGGC TTACCTCGGG GACTGCTTTG AGGGGAGTTG
  TTTTAAGGAA TTCTGCACAA GGGAACAACC CGGATGTAGA TTAGCGCCCT ATCAGCGACT
  Y
  CTCCTTGAGT CAGGGTCAGC AGCACTCTGC CCACCACCCT GGGGTGTGTT ATGGCGAGGT
  GCATGGGGAA CTCAGGTGGG GACAGCACAT ACTTTAATTC TCTCATCTTC CAATACAAGA
  TTTATGTGTT CTGTGTTGGC CAGGCACAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322452098	CHEV_7_138078756	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223453155					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130536972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19812	CpG island 19812	238 bp proximal
Htra1	HtrA serine peptidase 1	961 bp upstream
Tssr69536	transcription start site region 69536	918 bp upstream
Tssr69537	transcription start site region 69537	930 bp upstream
Tssr69538	transcription start site region 69538	1015 bp upstream