rs223454809 SNP Detail

Summary

• ID
  rs223454809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70110236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCAAGCC TGTCCAGTTT
  TGAGGTGCAA AGTAACTTGC AGCCTCCTGA GTAGCAGCGT CCATTTCTCC TTGTGTCAAA
  ATCTGTATTC TTAAAAAAAA ATTTTTTTGT ATGTCTGTGT ATCAGTATAT ATGTGGCAGG
  GTGGAAAATA TTTGAAAGTT GGTTTCCTCT TTCCAGACCG TGGGTTCTGG GAATATAATT
  Y
  CAGTTATATG CCTTGTGGCA AGCACTTTTT ACCTAGTGAG CCATCATGGC ATCAAGCCCC
  CATTCTGTAT TCTTGCAAAG GAACCACTGG ACAGAAAGGA CACAGGGTAG TTATACTTGG
  GAGCTTGGCC AGAAAAGTTT TTGCTTCATC ACTGTGATTA AGCAGGAGAG TGCAGTCCAC
  TTTAATGATG TTCTCCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396744528	MGP_WTSI_16_70313593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223454809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396744528	MGP_WTSI_16_70313593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70110236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	488 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	601 bp upstream
Rr517848	regulatory region 517848	111 bp proximal
Tssr138939	transcription start site region 138939	619 bp upstream
Tssr138940	transcription start site region 138940	650 bp upstream
Tssr138941	transcription start site region 138941	663 bp upstream
Tssr138942	transcription start site region 138942	709 bp upstream
Tssr138943	transcription start site region 138943	743 bp upstream
Tssr138944	transcription start site region 138944	771 bp upstream
Tssr138945	transcription start site region 138945	1129 bp upstream
Tssr138946	transcription start site region 138946	1319 bp upstream