rs223455241 SNP Detail

Summary

• ID
  rs223455241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72538608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGCCA CCATGGTGGC
  CTTGGTGAGA GTCTCTGAGG AACATAGCCA GATGAAGAAG CAACACCTTT GTTCCCCAAT
  ATTAACTCAC TGCCCCACCA CAGCTTCCCC CTGACTCCTA AGCATGCATA TATGCACATG
  GCCTGGCCCT CTCACCCATT CCCCTCAACC TTTGAAATTT AACATTCATC AACCATGTCC
  R
  CTCAGAGACT CCCTATAAAT CTTTCTTCTT GCTCATCCTG AAACTCAGAT GTTTTTGGCA
  AGAGGGGCTA GGAAAGATGG ATAGAGCACA CTGCCACCGC CATTGTTCCA TCCAGGCATG
  TGTTCCTCCT CTTCCTTGCT CATGTCTGAC TTCCAGCTCT CCTGGGCTCT GCTTGCTGCC
  CTTATCCTCT GGTGTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771588	MGP_WTSI_X_70740341	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223455241					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771588	MGP_WTSI_X_70740341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72538608 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	1008 bp distal
Rr6090	regulatory region 6090	1608 bp distal
Rr7747	regulatory region 7747	within coordinates
Rr10758	regulatory region 10758	1081 bp distal
Tssr5633	transcription start site region 5633	1725 bp downstream
Tssr5634	transcription start site region 5634	281 bp upstream
Tssr5635	transcription start site region 5635	50 bp downstream
Tssr161224	transcription start site region 161224	1966 bp downstream
Tssr161225	transcription start site region 161225	1788 bp downstream
Tssr161226	transcription start site region 161226	1737 bp downstream
Tssr161227	transcription start site region 161227	1687 bp downstream
Tssr161228	transcription start site region 161228	393 bp downstream
Tssr161229	transcription start site region 161229	360 bp downstream
Tssr161230	transcription start site region 161230	336 bp downstream
Tssr161231	transcription start site region 161231	311 bp downstream
Tssr161232	transcription start site region 161232	266 bp downstream
Tssr161233	transcription start site region 161233	192 bp downstream
Tssr161234	transcription start site region 161234	168 bp downstream
Tssr161235	transcription start site region 161235	86 bp downstream
Tssr161236	transcription start site region 161236	39 bp downstream
Tssr161237	transcription start site region 161237	14 bp downstream
Tssr161238	transcription start site region 161238	11 bp upstream
Tssr161239	transcription start site region 161239	60 bp upstream
Tssr161240	transcription start site region 161240	74 bp upstream
Tssr161241	transcription start site region 161241	110 bp upstream
Tssr161242	transcription start site region 161242	143 bp upstream
Tssr161243	transcription start site region 161243	307 bp upstream
Tssr161244	transcription start site region 161244	331 bp upstream
Tssr161245	transcription start site region 161245	426 bp upstream
Tssr161246	transcription start site region 161246	582 bp upstream
Tssr161247	transcription start site region 161247	605 bp upstream
Tssr161248	transcription start site region 161248	874 bp upstream
Tssr163547	transcription start site region 163547	325 bp upstream
Tssr163548	transcription start site region 163548	253 bp upstream
Tssr163549	transcription start site region 163549	187 bp upstream
Tssr163550	transcription start site region 163550	124 bp upstream
Tssr163551	transcription start site region 163551	within coordinates
Tssr163552	transcription start site region 163552	65 bp downstream
Tssr163553	transcription start site region 163553	151 bp downstream
Tssr163554	transcription start site region 163554	170 bp downstream
Tssr163555	transcription start site region 163555	197 bp downstream