rs223458987 SNP Detail

Summary

• ID
  rs223458987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43058032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAATGGG CTCGAAACTT
  GCAGTTTGTC TTGCACCGGT ACCCAGGGCT CAGCTTCCGC CTACATTTCC CCTCCTCTCT
  CACTCCAATC AAACACAGAC CAGCTGAGAA GGAGGCCAAC TTGTGCAAGT CCAAGATCCC
  CCTAAGGCCA CGATGTCACT GCTGCTGTTC CTGCTGTCCT TCCTGTTGGA TGGTGAGTGG
  R
  TCCAAGGCCA GAGTGGCTCA AATTGGGGCT GGGGCTGGGG CTGGGGCTGG GGCTGGGGCT
  GGGGCTGGGG CTGGGGCTGG GGCTGGGGCT GGGGCTAAAG CTTATGCCTC TGTCTCCGAC
  AGGGCCTCAA GGTCAGATGG AGAGCTACTT CCTACAGGTG CAGAGAATTG TGAAGGCACA
  GGAGGGTCTG TGCATCTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371130959	MGP_WTSI_7_50663978	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223458987					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371130959	MGP_WTSI_7_50663978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43058032 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	394 bp distal
Rr645954	regulatory region 645954	34 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	397 bp downstream
Tssr65985	transcription start site region 65985	388 bp downstream
Tssr65986	transcription start site region 65986	352 bp downstream
Tssr65987	transcription start site region 65987	335 bp downstream
Tssr65988	transcription start site region 65988	323 bp downstream
Tssr65989	transcription start site region 65989	90 bp downstream
Tssr65990	transcription start site region 65990	69 bp downstream
Tssr65991	transcription start site region 65991	644 bp upstream
Tssr65992	transcription start site region 65992	655 bp upstream
Tssr65993	transcription start site region 65993	688 bp upstream
Tssr65994	transcription start site region 65994	801 bp upstream