rs223459702 SNP Detail

Summary

• ID
  rs223459702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTAAT TAAAGATTTA
  TTTATTATTA TATGTAAGTA CACTGTAGCT GTCTTCAGAC ACACCAGAAG AGGGAGTCAG
  ATCTTGTTAC AGATGGTTGT GAGCCACCAT GTGGTTACTG GGATTTGAAC TCTGGACCTT
  CGGAAGAGCA GTCGGGTGCT CTTACCCACT GAGCCATCTC TCCAGCCCGC CCCCAGAATT
  Y
  TTATCCCACC TCAAGAGGAA AAAAACAAAA ACCCAAGGAA CCAGGCATGC TTACCATTTT
  ATTTTTTTTG TTTTGTTTTG TTTTGTTTTG TTTTTCAAGA CAGGGTTTCT CTATGTCACC
  CCGGTTATCC TCTGTAGATC AGGCTGGCCT TGAACTCAGA GACCCACCTA CCTCTGCCTT
  CTGAATGCTG GGAATAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824631	MGP_WTSI_5_135489551	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223459702					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824631	MGP_WTSI_5_135489551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042535 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1506 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	893 bp upstream
Gm73578	predicted gene, 73578	279 bp upstream
Rr622228	regulatory region 622228	59 bp distal
Rr622229	regulatory region 622229	747 bp distal
Rr622230	regulatory region 622230	472 bp distal
Rr622231	regulatory region 622231	371 bp distal
Rr622232	regulatory region 622232	244 bp distal
Rr622233	regulatory region 622233	120 bp distal
Rr622234	regulatory region 622234	1336 bp proximal
Rr622235	regulatory region 622235	1710 bp proximal
Rr622236	regulatory region 622236	1935 bp proximal
Rr622237	regulatory region 622237	1988 bp proximal
Tssr1662	transcription start site region 1662	944 bp upstream
Tssr1663	transcription start site region 1663	511 bp upstream
Tssr1664	transcription start site region 1664	477 bp upstream
Tssr53717	transcription start site region 53717	920 bp upstream
Tssr53718	transcription start site region 53718	873 bp upstream
Tssr53719	transcription start site region 53719	858 bp upstream
Tssr53720	transcription start site region 53720	813 bp upstream
Tssr53721	transcription start site region 53721	556 bp upstream
Tssr53722	transcription start site region 53722	523 bp upstream