rs223459950 SNP Detail

Summary

• ID
  rs223459950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79923390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAATACTA AAAGGCTCCA
  AATTTAAATT ATAGATGAGG AAATGCATGA AAGTCTGATG GAGTGTTAGA ATTCAATGGT
  AAAGTACTTG CATCGCTGAA TACATGATAG CCCCAAGAAC TCCGTCCGAA TGTTGCCTTC
  CGAAGCTTGA AACTTAAAGC TGATTTGTAA GGCATGTTGC TTGACCCTCT TGGTCGTTTT
  Y
  GTTCCTCTTG TTTATGGGTT CGAGCTCTTT ATGCCTTCCC CTTATCCCAA GGACCAGCTG
  ATGAATTCGT ATGAATGTTT CTTAGGAGCT CGTTCTAAAC ATTCAAGTTA CTTTAAGAAC
  ATTAATGTCT AGAGGTAAAA CTAAGACATG AACGCAATGT TTTCTTTTAA AAGCATTGTG
  TGTCCTAGTT CCCTTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399162035	MGP_WTSI_17_80015301	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223459950					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399162035	MGP_WTSI_17_80015301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79923390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	274 bp distal
Gm56916	predicted gene, 56916	within coordinates
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	within coordinates
Rr531314	regulatory region 531314	443 bp distal
Rr531315	regulatory region 531315	216 bp distal
Tssr145919	transcription start site region 145919	918 bp downstream
Tssr145920	transcription start site region 145920	890 bp downstream
Tssr145921	transcription start site region 145921	758 bp downstream
Tssr145922	transcription start site region 145922	730 bp downstream
Tssr145923	transcription start site region 145923	709 bp downstream
Tssr145924	transcription start site region 145924	665 bp downstream
Tssr145925	transcription start site region 145925	419 bp downstream
Tssr145926	transcription start site region 145926	901 bp upstream
Tssr149447	transcription start site region 149447	474 bp upstream