rs223462169 SNP Detail

Summary

• ID
  rs223462169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTACCA GTTTTGTAGT
  TAGAAACCAT AGTCAATGTC TCTCTACCCT CTCCAGGATT TATCCCTTTT AAAAAGTTTT
  AACCACTCTT ACAAGTGTGT GTTTATATCT CATTATGGTT AAATCTGTTA GTTTTTAATT
  AGATAGTGAC GCTGAAACTT CCTCATATGT TTACTTGACA TCAAATAAAG CTATTGTTTT
  W
  TTTCTCTTGT TGTTGTTGTT CTTCTCCTTC CTTCCTTCCT TCCCTCCCTC CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTC CTCCTCCTCT
  TCCTTCTACT AAGATTTATT ATGTGTACAA GTGGATTGCC TGAATGTGTG TGTGTGTGTA
  TGTGTGTGTG TGTGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ
ss388640362	MGP_WTSI_13_53474135	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ
rs223462169					SNP	A	A	A	A	A	A	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388640362	MGP_WTSI_13_53474135	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	1187 bp distal
Rr403780	regulatory region 403780	1163 bp downstream
Rr480032	regulatory region 480032	879 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	1401 bp upstream
Tssr122583	transcription start site region 122583	1393 bp upstream