rs223462810 SNP Detail

Summary

• ID
  rs223462810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8062008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTCAAT GAACTTCAAG
  CAGGAACTTA ATGGAAATAC CAAGTCAAAA CCCACTGTTT CATCATCCAT TGAACTAAAC
  TATGACTTCA ATTCCTCAAA GCTGCACTCT ACTGCAACAG GAGGCATTGA TCACAAGTTC
  AGCTTAGAAA GTCTCACTTC CTACTTTTCC ATTGAGTCAT TCACCAAAGG AAATATCAAG
  R
  GTTCCTTCCT TTCTCAGGAA TATTCAGGAA GTGTTGCCAA TGAAGCCAAT GTATATCTGA
  ATTCCAAGGG TACTCGGTCT TCAGTGAGGC TACAAGGAGC TTCCAAAGTT GATGGTATCT
  GGAACGTTGA AGTAGGAGAA AATTTTGCTG GAGAAGCCAC CCTCCAACGC ATCTACACCA
  CATGGGAGCA CAATATGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064727	MGP_WTSI_12_8018814	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223462810					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064727	MGP_WTSI_12_8018814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8062008 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112662	transcription start site region 112662	1947 bp downstream
Tssr112663	transcription start site region 112663	1706 bp downstream
Tssr112664	transcription start site region 112664	1682 bp downstream
Tssr112665	transcription start site region 112665	1527 bp downstream
Tssr112666	transcription start site region 112666	1507 bp downstream
Tssr112667	transcription start site region 112667	1458 bp downstream
Tssr112668	transcription start site region 112668	1322 bp downstream
Tssr112669	transcription start site region 112669	1235 bp downstream
Tssr112670	transcription start site region 112670	1179 bp downstream
Tssr112671	transcription start site region 112671	1076 bp downstream
Tssr112672	transcription start site region 112672	494 bp downstream
Tssr112673	transcription start site region 112673	426 bp downstream
Tssr112674	transcription start site region 112674	351 bp downstream
Tssr112675	transcription start site region 112675	319 bp downstream
Tssr112676	transcription start site region 112676	223 bp downstream
Tssr112677	transcription start site region 112677	71 bp downstream
Tssr112678	transcription start site region 112678	42 bp upstream
Tssr112679	transcription start site region 112679	67 bp upstream
Tssr112680	transcription start site region 112680	86 bp upstream
Tssr112681	transcription start site region 112681	133 bp upstream
Tssr112682	transcription start site region 112682	146 bp upstream
Tssr112683	transcription start site region 112683	183 bp upstream
Tssr112684	transcription start site region 112684	227 bp upstream
Tssr112685	transcription start site region 112685	275 bp upstream
Tssr112686	transcription start site region 112686	323 bp upstream
Tssr112687	transcription start site region 112687	403 bp upstream
Tssr112688	transcription start site region 112688	504 bp upstream
Tssr112689	transcription start site region 112689	546 bp upstream
Tssr112690	transcription start site region 112690	571 bp upstream
Tssr112691	transcription start site region 112691	622 bp upstream
Tssr112692	transcription start site region 112692	658 bp upstream
Tssr112693	transcription start site region 112693	677 bp upstream
Tssr112694	transcription start site region 112694	815 bp upstream
Tssr112695	transcription start site region 112695	1034 bp upstream