rs223464107 SNP Detail

Summary

• ID
  rs223464107
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122067850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTCCTT TGGCTTCCGT
  AAAGACTTAC GCCAAAGATC TCACAATTAC TGCACGGGGG TGGGGGGTGA GGGGGATGGA
  AAGCAGAGTA AATGATGCGA CTTCCCATTT TGTGTTAAAC GGCGAGGAGG TCCTCCTCGC
  TGAGGACCGC ACAGCGGACG AGCTGGGAAC TGGAGGCGGA GCTGCTTTTG CCCCCCCCCC
  M
  CCCCAACACA CACACCCCAC CCCCCCACCC CCCGCTGACC CGCACTAGTC CGATGGCGGA
  GACCGCTGGC CAGAACTGCA GTGGAGCCGG GGAAGGAACG ATTCTCCCGA GCCGCGGTTT
  CCGCAGGGAA ACCTAAGCGA GTTCCTGTTT CGACGCACTT CCGAAGCGTC GGAACAGAGG
  AAGCCGCGCT GGCTGCCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss359496467	MGP_WTSI_3_121977119	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs223464107					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496467	MGP_WTSI_3_121977119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122067850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	within coordinates
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	195 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584273	regulatory region 584273	within coordinates
Rr584274	regulatory region 584274	198 bp proximal
Tssr31491	transcription start site region 31491	170 bp upstream
Tssr31492	transcription start site region 31492	1352 bp upstream