rs223470824 SNP Detail

Summary

• ID
  rs223470824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96678452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAACTAAC CCTCTTTTTC TTTTGTCTTA
  GTTTTTTGAA CAGAAAAGTT GTCACTGTTT CGGGGTTTTT TTGATTTTTG GTTTGTTTGT
  TTGttttttt ttttaagaca agctctcact ctgtaaccta ggctACATAG TCTAAACTGC
  R
  Cttttttttt tttttttttt tttGGGTTTG CTGTTGTGTT TGtttgtttg tttgagacag
  ggtttctctg tgtagccctg gctctcctgg aactcactct gtagaacagg ctggtcttga
  actcagaaat tctcctgcct ctgcctccta                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323822795	CHEV_11_96648940	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223470824					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96678452 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	1501 bp upstream
Cpgi3668	CpG island 3668	1214 bp proximal
Rr455508	regulatory region 455508	1081 bp proximal
Rr455509	regulatory region 455509	1634 bp proximal
Tssr104569	transcription start site region 104569	1492 bp upstream
Tssr104570	transcription start site region 104570	1523 bp upstream
Tssr104571	transcription start site region 104571	1587 bp upstream
Tssr104572	transcription start site region 104572	1609 bp upstream
Tssr110346	transcription start site region 110346	1362 bp downstream