rs223473830 SNP Detail

Summary

• ID
  rs223473830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36553928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTATAA GCTCTGTGTG ACACTCTATG
  TGTATTATGT TAAATAAAGG TTATAACTTT GCTAACAAGG GATTTGGCTG TAGGATTGAA
  TTTaaccagg cacagaggca cacacacctt taatcccagc cctgggaggc agggtcagat
  Y
  tctcatagtg aggaggtcca ggacagccag agctacatag taagactgtt tcaaaaaaat
  taaaGAATTG ACTTTCTATC CTGTAGGAAT AAGAAGGAGT TCCTGTCCAG GTGGCACGTT
  CCTGAGTTCT TGTCAGccag ggtaattcat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923050	CHEV_15_36483538	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223473830					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36553928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	1536 bp proximal
Rr311658	regulatory region 311658	1473 bp proximal
Rr313210	regulatory region 313210	1728 bp distal
Snx31	sorting nexin 31	within coordinates
Tssr134019	transcription start site region 134019	1530 bp downstream
Tssr134020	transcription start site region 134020	1753 bp downstream
Tssr134021	transcription start site region 134021	1773 bp downstream
Tssr134022	transcription start site region 134022	1803 bp downstream