rs223477346 SNP Detail

Summary

• ID
  rs223477346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55252566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGCCGGT GATGCGGCCG ACGGTTTCTG
  AACCTTGGGT TCCCGCTCCT CCATCCCAAC CATCCAAATT ACGGATGAAA AGGGCTCCAC
  TGTTGTTCAA GGACAGTCAC AGAACCAGGA AAGGCGCACT TGGAAGTCCT GGGGCCAATG
  R
  CGGCCCAGCA ACCCTGCCGC ATCAGAGAAC GGACGGAAGC CGCCACCCTG CGGTCTGTTT
  TGGCACTACA CGGAAAACGC CGTGGAAAGA CTGTCTCTGC GGCATCTGGG AGCCAATGAG
  CTCTCGGGCT GCATAACTAA TTTCTTTTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641571	CHEV_14_55633946	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223477346					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55252566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63342	predicted gene, 63342	1895 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	345 bp upstream
Rr369830	regulatory region 369830	within coordinates
Rr369831	regulatory region 369831	195 bp upstream
Rr404108	regulatory region 404108	687 bp downstream
Rr492392	regulatory region 492392	within coordinates
Rr492393	regulatory region 492393	37 bp proximal
Rr492394	regulatory region 492394	356 bp proximal
Rr492395	regulatory region 492395	682 bp proximal
Rr492396	regulatory region 492396	1049 bp proximal
Tssr125743	transcription start site region 125743	421 bp upstream