rs223477850 SNP Detail

Summary

• ID
  rs223477850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29735276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAACTGAG AGAAATGTCC TCTCCTAAAA GTCACGTCAA
  ACAACCTTAG GACCAACTAA AGATTCAGTC AAGTGCCTCT GGGACACAAC TTGCACGCAT
  Y
  CCCCCCCCCC CCCCCCCCCG CGAGGGTCTT CTGTAGGGTG AAGGTTCCCG AATACCCCCA
  CCCCAGCCCC TTCGGGCATT TAGGCCGCCA AAGCTGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321775194	CHEV_6_29685277	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223477850					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29735276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	62 bp proximal
Rr627623	regulatory region 627623	within coordinates
Smo	smoothened, frizzled class receptor	226 bp upstream
Tssr55287	transcription start site region 55287	194 bp upstream
Tssr55288	transcription start site region 55288	334 bp upstream
Tssr55289	transcription start site region 55289	354 bp upstream
Tssr55290	transcription start site region 55290	390 bp upstream
Tssr55291	transcription start site region 55291	848 bp upstream