rs223480133 SNP Detail

Summary

• ID
  rs223480133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115221213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGCGGA GGAGGAAGGG
  GAAGGCAGGC GGCGGTCGGG CGGTCCCCGG CCGGAGGGCT TCAGGTCGTG TGGCCAGCGC
  TGCACTCCGG ATGGCGGCCG CCGCCGATCC TTCGACCCCG GCCTCTAGCG GCCTCTCGCC
  GAAGGAAGAA GGGGAGCTCG AAGACGGGGA GATCAGCGAC GACGACAACA GCCGGAGCCG
  R
  AGCAGCAGCA GCAGCAGCAG CGGCGGCGGG CTGTTACCGT ACCCGCGGCG GCGGCCTCCT
  CCCCCGGCCC GGGGCGGTGG ATCCGGGGGA GGCGGCGGCG GCTCCTCGTC CTCCTCGTCG
  TCCTCCCAGC AGCAGCTGAG GAATTTCTCA CGCTCACGGC ACCCGGCCGA GCGGGGCCAG
  CTCAGGGGAC CCAGCAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381866148	MGP_WTSI_10_114822364	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223480133					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381866148	MGP_WTSI_10_114822364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115221213 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2206	CpG island 2206			within coordinates
Rr402239	regulatory region 402239			279 bp downstream
Rr439213	regulatory region 439213			909 bp distal
Rr439214	regulatory region 439214			994 bp distal
Rr439215	regulatory region 439215			339 bp distal
Rr439216	regulatory region 439216			328 bp distal
Rr439217	regulatory region 439217			65 bp distal
Thap2	THAP domain containing, apoptosis associated protein 2			873 bp upstream
Tssr95813	transcription start site region 95813			1358 bp downstream
Tssr95814	transcription start site region 95814			359 bp downstream
Tssr95815	transcription start site region 95815			287 bp downstream
Tssr95816	transcription start site region 95816			251 bp downstream
Tssr99330	transcription start site region 99330			972 bp upstream
Tssr99331	transcription start site region 99331			933 bp upstream
Tssr99332	transcription start site region 99332			873 bp upstream
Tssr99333	transcription start site region 99333			799 bp upstream
Tssr99334	transcription start site region 99334			746 bp upstream
Tssr99335	transcription start site region 99335			512 bp upstream
Zfc3h1	zinc finger, C3H1-type containing			Coding-Synonymous
				Noncoding-Transcript-Variant