rs223490627 SNP Detail

Summary

• ID
  rs223490627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115626038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAATTGG ACTCAGGGTT
  TGAGTTGGTT TTTTTGGGGG GGGGGTTTTG TTTTTTTTTT GGTTTTTTTG GTTTTTGGTT
  TTTTTGTTGT TGTTTGTTTG TTTGTTTGTT TTTGGTTTTT CGAGACAGGG TTTCTCTGTA
  TTGCCCTGGC TGTCCTGGAA CTCGCTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC
  R
  CCTGCCTCTG CCTCCCGAGT GCTGAGTGCT GGCTGGGATT AAAGGCATAC GCCACCACTG
  CCCTGCTGCT CTTGAACTTT AATGAGAAGC AAAGGCCAAA ATAAAAATGG AAACTACTCC
  TCAGGCAAGA AGGTCAGGGC TGGAGTGATG GCTCAGCGGT TAAGAGCACT GACTGCTCTT
  CCAGAGGTCC TGAGTTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366357694	MGP_WTSI_5_115937988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223490627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366357694	MGP_WTSI_5_115937988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115626038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	1842 bp proximal
Gm24265	predicted gene, 24265	1480 bp upstream
Gm42007	predicted gene, 42007	1289 bp downstream
Gm57305	predicted gene, 57305	1654 bp downstream
Rr1425	regulatory region 1425	413 bp proximal
Rr108333	regulatory region 108333	within coordinates
Rr124163	regulatory region 124163	562 bp proximal
Tssr48292	transcription start site region 48292	1331 bp upstream
Tssr48293	transcription start site region 48293	1477 bp upstream
Tssr48294	transcription start site region 48294	1552 bp upstream
Tssr52808	transcription start site region 52808	943 bp downstream
Tssr52809	transcription start site region 52809	965 bp downstream
Tssr52810	transcription start site region 52810	1574 bp downstream
Tssr52811	transcription start site region 52811	1851 bp downstream
Tssr52812	transcription start site region 52812	1964 bp downstream
Tssr52813	transcription start site region 52813	1976 bp downstream