rs223490920 SNP Detail

Summary

• ID
  rs223490920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125870043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACAGGGG ATGCTTGGCA
  AGCTCATTAG GAATGCAACC TAAGAGACAT TGTTCTCAAC AGAGCTGGTG CCCACAAAGG
  ACCTGGTTTC CAGAAAACTA ACTTTCAGTA AAAGTGGGAG GAAGGTGGGC TAGGATTACA
  AGTAGCAGTA GCAGTAGTGT GGGCTGCCAA GCAGAAGTCT GCGCATCAGC TTTGGGTGTT
  Y
  GTTTCTTCGT TTCTTCGTCC AGTTCTGGGG ACTGAGTCCA GGGTCTTCCC TATGCCAAGA
  CTGAGCCACA TTTCTAGTTC CTGTCTGTAG TTTATTCAAC TTAGGTGTGT GTGTGTGTGT
  GTAGAGGGCA GAAGTTGACA TTATCAGGTG TATTCTTCAA TCCCTCCCCA GCTCATTTAA
  CTTTTTGTGG GTGCGTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss373065169	MGP_WTSI_7_133414385	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	C	T	T	C	C	T	C	C	T	T	T	T	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs223490920					SNP	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	C	T	T	C	C	T	C	C	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373065169	MGP_WTSI_7_133414385	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125870043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	846 bp proximal
Rr368426	regulatory region 368426	877 bp upstream
Rr381444	regulatory region 381444	within coordinates
Rr655453	regulatory region 655453	1258 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1542 bp upstream
Tssr69003	transcription start site region 69003	1557 bp upstream
Tssr69004	transcription start site region 69004	1573 bp upstream
Tssr69005	transcription start site region 69005	1592 bp upstream
Tssr69006	transcription start site region 69006	1604 bp upstream
Tssr69007	transcription start site region 69007	1635 bp upstream
Tssr69008	transcription start site region 69008	1655 bp upstream
Tssr69009	transcription start site region 69009	1718 bp upstream
Tssr69010	transcription start site region 69010	1913 bp upstream
Tssr69011	transcription start site region 69011	1976 bp upstream