rs223495489 SNP Detail

Summary

• ID
  rs223495489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTGGTG TCTCTCTCTC
  TCTTCCCCTC TCTTCTCTCT GATTGGGAAT CTTGGATTTC TCTGTGGCTT CCTTACTACT
  CTGCTGTCTT TTCTGACTTG TGTATGTTTT ACAGGTAGCG TTGGTATATG GACAGATGAA
  CGAACCACCT GGCGCTCGAG CCCGGGTAGC TCTGACTGGT TTGACCGTTG CTGAATACTT
  Y
  AGAGACCAGG AGGGCCAAGA TGTCCTGCTG TTTATTGACA ACATCTTCCG CTTTACCCAG
  GCTGGCTCAG AGGTAGGGGG GAAGCCTCGA GGCCTGGTTT GTTGAGCCAG TTGGGCATAT
  TAGAAGAAAG ATGTAGACAC CTAAGACCAT TATTCTTTAC TTCTGTCTTT TAGGTGTCTG
  CCTTATTGGG CAGAATCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382197829	MGP_WTSI_10_127523180	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223495489					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382197829	MGP_WTSI_10_127523180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921993 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1977 bp distal
Gm55458	predicted gene, 55458	764 bp downstream
Mir677	microRNA 677	761 bp downstream
Rr441098	regulatory region 441098	345 bp proximal
Rr441099	regulatory region 441099	445 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1908 bp downstream
Tssr96322	transcription start site region 96322	596 bp downstream
Tssr96323	transcription start site region 96323	27 bp downstream
Tssr96324	transcription start site region 96324	8 bp upstream
Tssr96325	transcription start site region 96325	168 bp upstream
Tssr96326	transcription start site region 96326	185 bp upstream
Tssr96327	transcription start site region 96327	201 bp upstream
Tssr96328	transcription start site region 96328	248 bp upstream