rs223500404 SNP Detail

Summary

• ID
  rs223500404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34688377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC ACTTGTTCCA GATAGCAAGG
  Y
  TCATGATATA GAAATCTGTT ATCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321075210	CHEV_4_34635626	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223500404					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34688377 () rs orientation: forward

Symbol	Name	Function Class
Cfap206	cilia and flagella associated protein 206	182 bp downstream
Cpgi14121	CpG island 14121	804 bp distal
Rr100808	regulatory region 100808	176 bp distal
Rr398199	regulatory region 398199	853 bp downstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	939 bp upstream
Tssr41193	transcription start site region 41193	1068 bp upstream
Tssr41194	transcription start site region 41194	1035 bp upstream
Tssr41195	transcription start site region 41195	1002 bp upstream
Tssr41196	transcription start site region 41196	925 bp upstream
Tssr41197	transcription start site region 41197	913 bp upstream