rs223512048 SNP Detail

Summary

• ID
  rs223512048
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100974705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATAGTA AGGGCGTGAG
  GGTCGCCTCT GGATGCTGCG GGCACCAATG GAATCAAGTA GAAAGAAATG AAATGGTGCT
  AAATGTGGGT AAGGGCGATT TACGAGGCCT GTCACACAGT CCTCCCGGGC CATCCAAGCA
  AGATCCTCCC CTTTCTTCGG GCGACTGGAG AAAGTCCCGC CCCGCCCCCC TGCCCACAGC
  W
  CAGGGTGGTC GAAAACCCGC TCTCGGATCC TGGAGCACTG CAGACCGGCA CCCCCTTGCA
  CCCTGTTACG GCTGTCCCAG GGGGGGGGGC AGGACTAAAA CCCAGAGAAG GACGTTCGCG
  CCCTGCCTAG GGATACTGGG GTGACGGGAG GTTCCGGAAG GATGCTCAGG GGTTTTGGAT
  GGGATTCTGG CAGGGTTCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395190019	MGP_WTSI_15_100907255	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223512048					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395190019	MGP_WTSI_15_100907255	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100974705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	642 bp proximal
Fignl2	fidgetin-like 2	within coordinates
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	1054 bp upstream
Rr509897	regulatory region 509897	437 bp distal
Rr509898	regulatory region 509898	564 bp proximal
Rr509899	regulatory region 509899	1065 bp proximal
Rr509900	regulatory region 509900	1733 bp proximal
Tssr133183	transcription start site region 133183	1057 bp upstream
Tssr136514	transcription start site region 136514	1545 bp downstream
Tssr136515	transcription start site region 136515	1586 bp downstream
Tssr136516	transcription start site region 136516	1665 bp downstream
Tssr136517	transcription start site region 136517	1983 bp downstream