rs223514732 SNP Detail

Summary

• ID
  rs223514732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAAATG TATGTAAATA
  TACTTCAAGT ATTTTGTTAT GGACAATATT GCGTCGTACT CGGCCCCATG GTGTAATGGT
  TAGCACTCTG GACTTTGAAT CCAGCGATCC GAGTTCAAAT CTCGGTGGGA CCTTCTTTCC
  TTTTGCCGTT CTACCAGTTA CTGGATCATC TTGCTTACAT TTCTTCCAGT GGCTGGATCC
  Y
  CCTTCTCAAT TCTGGTCTCT GCTAAGTAAG TATACGGGTG GTTAGAGAGT TAGCTGTTAG
  AGTGTCCATA TTTTTCCGCA GCAATCTTTT CTCTGGAATC TCTTCAAAAT ATATTTTCGA
  ATGCAAAAAG AAATGTTAGC AATAAGCTAA CATTAGTTAT TAGGAGATAT TCAGTGACTG
  TTTAAGAGTA ATATGGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984162	MGP_WTSI_13_23611621	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223514732					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984162	MGP_WTSI_13_23611621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1463 bp distal
Gm54514	predicted gene, 54514	1502 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TMcat6	nuclear encoded tRNA methionine 6 (anticodon CAT)	1989 bp downstream
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	631 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	68 bp downstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1525 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1678 bp proximal
Rr403642	regulatory region 403642	1921 bp downstream
Rr403643	regulatory region 403643	1389 bp downstream
Rr403644	regulatory region 403644	525 bp downstream
Rr403645	regulatory region 403645	within coordinates