rs223515241 SNP Detail

Summary

• ID
  rs223515241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69814853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCATGCT TCATGGACAT
  TAACAAGCCA CAAGCCACTG TAATCTCATT TACAGGAGGT CATGGCGGAT CTTAGGTAAC
  CAATATCACA GGGCAGAACA AGCTCTTGGG CAGAGCTGAG AAGTATCTCA TCCTCCAGCC
  GCTGGAGGAA GGACATCAGC AAGGCCCTGC CCACCACTGT ACAGCTCTGA GCTGTCAGGC
  R
  TTCTCCATGT TTCCCCAGCC AAAGGCAGAC CCCCACCCCC ACCCCCTTCC TCTCCAGGAA
  CGGAGTAGAA GAATCCCACA GCACAATCGG CTCCTGGGAT AATAGCATCT TTCTAGCTGG
  CCAATCAGAG ATTCAATAGG TTTTATGTGT AGCTTTCTCT TTAAGAGTTC CCTTCTTCTG
  GGAAAACTGC ATGGGCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085525	CHEV_12_70869066	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223515241					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69814853 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467132	regulatory region 467132	1410 bp distal
Rr467133	regulatory region 467133	288 bp distal
Tssr116524	transcription start site region 116524	787 bp upstream
Tssr116525	transcription start site region 116525	1224 bp downstream
Tssr116526	transcription start site region 116526	1654 bp downstream