rs223515810 SNP Detail

Summary

• ID
  rs223515810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129230668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGACTGCT CTTCCGAAGG
  TCAGGAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA CAAGATCTGA CTCCCTCTTC
  TGGAGTGTCT GAGGACAGCT ACAGTGTATT TACATATAAT AAATAAATAA ATATTTAAAA
  AAAAAATTTA GCCGGGTAGT GGTGGCGCAC GCCTTTAATC CCAGCACTTG GGAGGCAGAG
  R
  CAGGCGGATT TCTAAGTTCG AGGCCAGCCT GGTCTGCATA GTGAGTTCCA GGACAGCTAG
  AGCTACAGAG TAAGGCCCTG TCTCAGAAAT AAAGAAATTT CTTATGTCTT TAATGGACAT
  CCTAGACTAG TAGTCTACCC CTGAGCTATA ATGGCTTCTG CCCTACAGTA GTCTTTGAGT
  ATAGGGTTCC TGAGATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312052	CHEV_4_129014119	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223515810					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129230668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	871 bp distal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	1505 bp upstream
Rr367701	regulatory region 367701	1208 bp downstream
Rr367702	regulatory region 367702	728 bp downstream
Rr600200	regulatory region 600200	1533 bp distal
Rr600201	regulatory region 600201	853 bp distal
Rr600202	regulatory region 600202	113 bp distal
Tssr39141	transcription start site region 39141	1230 bp downstream
Tssr39142	transcription start site region 39142	888 bp downstream
Tssr39143	transcription start site region 39143	834 bp downstream
Tssr43492	transcription start site region 43492	1611 bp upstream
Tssr43493	transcription start site region 43493	1558 bp upstream
Tssr43494	transcription start site region 43494	1498 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates