rs223516249 SNP Detail

Summary

• ID
  rs223516249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157403057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGGACA AAAACGGAAG
  GGGAAAGAAC ATTTTCAAAA AAAAAAAAAA AAGAAAGAAA GAAAGAAAAA GAAAAAAGAA
  AGAAAGAAAG AAAGAAAGGG GCAAATCATT TTATGGAAAA AGAGAGTGCG CGATATCGCG
  CGCAAAAGTG CTTCTCTTAA AGCCAAACTG GAAGAAAGCG CTTTGTGCAA AAAAAAACTA
  Y
  CTACCCCAAG AGCTCCCTTT GCAGGAATCC TGCTAAAGGA ATCCTTTGCC AAAGGAATCG
  CATATTTCCT TCAAGGTGTT CCTGGAATGC TGCATTTACT GGGTAGGATT CGCTTTTCGA
  AATCCTCCAG GGACACAGCC CATTGCGAGA AGTGAGGTAT ACTTAAGTTG TGGGTCCAAT
  CAGCTTGCAG CCATGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262045	MGP_WTSI_2_157386873	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223516249					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262045	MGP_WTSI_2_157386873	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157403057 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	543 bp distal
Cpgi12576	CpG island 12576	323 bp proximal
Gm56190	predicted gene, 56190	1224 bp downstream
Nnat	neuronatin	within coordinates
Rr568543	regulatory region 568543	997 bp distal
Rr568544	regulatory region 568544	1210 bp proximal
Tssr721	transcription start site region 721	1304 bp downstream
Tssr21268	transcription start site region 21268	1018 bp downstream
Tssr21269	transcription start site region 21269	533 bp downstream
Tssr21270	transcription start site region 21270	462 bp downstream
Tssr21271	transcription start site region 21271	348 bp downstream
Tssr21272	transcription start site region 21272	309 bp downstream
Tssr21273	transcription start site region 21273	338 bp upstream
Tssr21274	transcription start site region 21274	580 bp upstream
Tssr21275	transcription start site region 21275	635 bp upstream
Tssr21276	transcription start site region 21276	736 bp upstream
Tssr21277	transcription start site region 21277	765 bp upstream
Tssr21278	transcription start site region 21278	800 bp upstream
Tssr21279	transcription start site region 21279	892 bp upstream
Tssr21280	transcription start site region 21280	971 bp upstream
Tssr21281	transcription start site region 21281	1018 bp upstream
Tssr21282	transcription start site region 21282	1143 bp upstream
Tssr21283	transcription start site region 21283	1157 bp upstream
Tssr27183	transcription start site region 27183	254 bp upstream
Tssr27184	transcription start site region 27184	164 bp upstream
Tssr27185	transcription start site region 27185	715 bp downstream
Tssr27186	transcription start site region 27186	842 bp downstream