rs223517916 SNP Detail

Summary

• ID
  rs223517916
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9530764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCAGAAG AGGCAGGAGC
  CAAAGAGAAA TACAGTGAAA TTATCTATTA TAAAAATAAT AGGATCTTTG TGTTCATAAT
  TTCACAGAAG CTATGGTTGT GACACAAGAC TGGCATGAGA TCACACCAAT CCACATTCCA
  ATATGGACAG AGCAGGTGTT CAAGAGGCCA CATCCCTAGC TGAGGCCCTC CTGGCAGGTT
  S
  ACAAATACCA GGCGATTAAG AGTTAGTTTT CTTTAAAAGT GTGTCCCATG GTAGGTTGCT
  CAAGCTCTAG TGGGCAGTTA TACACTCATG AGCACAAGAG CTGAACTAAG TAGGTTCTGT
  GGATCCTTTT CTTAAATCAT TTTAAGAATT GATTAAGTTA TTTATTTATC CTAAATTCTG
  ACTGCAGCGC CCCCCCCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392986054	MGP_WTSI_15_9460433	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223517916					SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392986054	MGP_WTSI_15_9460433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9530764 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	502 bp upstream
Rr186	regulatory region 186	566 bp distal
Rr499183	regulatory region 499183	1915 bp distal
Rr499184	regulatory region 499184	532 bp distal
Tssr133703	transcription start site region 133703	970 bp upstream
Tssr133704	transcription start site region 133704	906 bp upstream
Tssr133705	transcription start site region 133705	832 bp upstream
Tssr133706	transcription start site region 133706	813 bp upstream
Tssr133707	transcription start site region 133707	797 bp upstream
Tssr133708	transcription start site region 133708	642 bp upstream
Tssr133709	transcription start site region 133709	493 bp upstream
Tssr133710	transcription start site region 133710	356 bp upstream