rs223524320 SNP Detail

Summary

• ID
  rs223524320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28588680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCTGC TGCTTTCTTT
  GTTGGGGAGG CCTCATCTTT GCTTCCCCAG CTGACAAGTC TACCGAGGCC TGAGGCCTTT
  GAGGAAGCAG GTCTCGGGGA CAGAGGGCTG CGCTGTGGCT TTACATGGGC AGGTGTCATT
  ATCCCAGGTC AGAACGCTAG CTCTCAGCCT TGAGGCTCCC TCTGATTTCA TTCTCAGCCC
  Y
  TGGGCAAGAC TTTTCCCCTT TGCTAGGCCT TAGCCTCTGT TTCTGTAAAA GGTGGGGGAT
  TGGATAGAAA CTCTTCAAGC TATTGAAACT TCCTCTCTGT GCCCAGCAGC TGTCGAGGGA
  AGAAATCCAG AAAGAGGAAA TGACTTGCCC AAAGCCACCA GCTAACTCCT CTGGCCTGTC
  TTATTCTGCA GTGTCTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481791	MGP_WTSI_2_28554188	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223524320					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481791	MGP_WTSI_2_28554188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28588680 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	1496 bp upstream
Cpgi11391	CpG island 11391	865 bp proximal
Rr553884	regulatory region 553884	within coordinates
Rr553885	regulatory region 553885	544 bp proximal
Rr553886	regulatory region 553886	695 bp proximal
Rr553887	regulatory region 553887	973 bp proximal
Spaca9	sperm acrosome associated 9	within coordinates
Tssr16968	transcription start site region 16968	184 bp upstream
Tssr16969	transcription start site region 16969	1119 bp upstream
Tssr16970	transcription start site region 16970	1483 bp upstream
Tssr16971	transcription start site region 16971	1487 bp upstream
Tssr23291	transcription start site region 23291	968 bp downstream
Tssr23292	transcription start site region 23292	993 bp downstream
Tssr23293	transcription start site region 23293	1060 bp downstream