rs223538836 SNP Detail

Summary

• ID
  rs223538836
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128360074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGATC CAAGCATACA
  ATCCCGGGGG TGGGAGAATT CTTTCCTTAG AACTTGGGGA CACTGAGGCT TCTTTAATAA
  GGGGAGTGGG TAGGATGTGG GGCCACATAG AGATGCTTCA GCTAGCTCAG AGATGCGAAA
  TGGCAGCTTC TGGGGCCAAG GAGGGGGAGG GGGAGGAGTC TTGAAGAGAA GGGTACATTC
  K
  TTCAGGAGGA GATCCTGTCA AATCAGAACT CCGGGGAATC CTGGGATGAA GAAGTCCTAG
  TTCCTTTGTC CAGCCTTCCC TGCTCCCCTG GGACCGGGCG TGGGCTCCAG TATAAGAAGG
  TGAAGAAGAA ACCAAACCCT GATAACCTAG AGACTGGCAG GAAGTCTTAG GCCTGGTGCG
  CTGGTGCGCT AGTGCCTGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323534403	CHEV_10_127961261	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223538836					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128360074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2406	CpG island 2406	501 bp proximal
Esyt1	extended synaptotagmin-like protein 1	within coordinates
Gm29585	predicted gene 29585	within coordinates
Rr224467	regulatory region 224467	within coordinates
Rr369107	regulatory region 369107	747 bp upstream
Rr369108	regulatory region 369108	1101 bp upstream
Rr402353	regulatory region 402353	1659 bp upstream
Tssr99886	transcription start site region 99886	1725 bp upstream
Tssr99887	transcription start site region 99887	1656 bp downstream